Contact: Cole Trapnell <cole@cs.umd.edu>
Bug-Database: https://github.com/cole-trapnell-lab/cufflinks/issues
Bug-Submit: https://github.com/cole-trapnell-lab/cufflinks/issues/new
Reference:
 - Author: >
    Cole Trapnell and Brian A Williams and Geo Pertea and
    Ali Mortazavi and Gordon Kwan and Marijke J van Baren and
    Steven L Salzberg and Barbara J Wold and Lior Pachter
   Title: >
    Transcript assembly and quantification by RNA-Seq reveals
    unannotated transcripts and isoform switching during cell differentiation
   Journal: Nature Biotechnology
   DOI: 10.1038/nbt.1621
   URL: http://www.nature.com/nbt/journal/v28/n5/full/nbt.1621.html
   Year: 2010
   PMID: 20436464
   Pages: 511-515
   Volume: 28
   Number: 5
   Type: article
 - Author: >
    Cole Trapnell and Adam Roberts and Loyal Goff and
    Geo Pertea and Daehwan Kim and David R Kelley and
    Harold Pimentel and Steven L Salzberg and John L Rinn and
    Lior Pachter
   Title: Differential gene and transcript expression analysis
    of RNA-seq experiments with TopHat and Cufflinks.
   Journal: Nat. Protocols
   Year: 2012
   DOI: 10.1038/nprot.2012.016
   URL: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html
   Pages: 562-578
   Volume: 7
   Number: 8
   PMID: 22383036
   Type: article
Registry:
 - Name: SciCrunch
   Entry: SCR_014597
 - Name: OMICtools
   Entry: OMICS_01304
 - Name: bio.tools
   Entry: cufflinks
 - Name: conda:bioconda
   Entry: cufflinks
Repository: https://github.com/cole-trapnell-lab/cufflinks.git
Repository-Browse: https://github.com/cole-trapnell-lab/cufflinks
