vg (1.78.0+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
    Closes: #1089275, #1113618, #1147107
  * d/watch: version=5
  * Standards-Version: 4.7.4 (routine-update)
  * Reflow Uploaders field (cme)
  * Remove Priority field (cme)
  * Drop 'Rules-Requires-Root: no' from d/control (routine-update)
  * Replace FSF postal address with a reference to
    https://www.gnu.org/licenses/.
  * debputy lint --auto-fix (routine-update)
  * Link against the Debian-packaged GSSW, SSW, GBWT, GBWTGraph, GCSA2,
    KFF and WFA2 libraries instead of building the bundled copies.
  * Link against the Debian-packaged libhandlegraph, libbdsg, libvgio,
    libsdsl, libstructures and libtabixpp instead of building the bundled
    copies.
    Closes: #976511
  * Use the Debian-packaged libxg and its installed headers.
  * Use the Debian-packaged sonLib.
  * Use the Debian-packaged pinchesAndCacti and its installed headers.
  * Use the Debian-packaged cairo and pixman.
  * Use the Debian-packaged header-only helper libraries (atomic-queue,
    BBHash, ips4o, mio, mmmulti, sparsepp and xxsds-dynamic).
  * Use the Debian-packaged GFAz
  * Use the Debian-packaged libcpp-progress-bar
  * Link the static libquicktree to satisfy the TreeREP symbols that
    Debian's libsonlib leaves unresolved (neighbour_joining_buildtree and
    friends), used by vg's tree code. (FIXME!)
  * Build micro-libraries (sha1 and lru_cache) from debian/missing-sources.
  * Do not force -msse4.1 on every SIMD variant
  * debian/tests/control: Exclude the snarl distance index test cases that
    still expect the pre-interface-change libbdsg behaviour
  * Update lintian-overrides
  * d/copyright: Completely remove deps dir
  * Add myself to debian/ dir copyright
  * debian/tests/control: Replace skip-not-installable by 
      Architecture: amd64 arm64
  * Drop bsdmainutils from ored Build-Depends
  * d/salsa-ci.yml: Do not build on i386
  * debian/tests: Test every installed SIMD variant
    Closes: #987184
  * Explicitly disable LTO: vg does not build with link time optimization
    enabled.
    Closes: #1015699

 -- Andreas Tille <tille@debian.org>  Sun, 08 Nov 2026 10:34:51 +0100

vg (1.59.0+ds-0.1) unstable; urgency=medium

  * Non-maintainer upload

  [ Andreas Tille ]
  * Update lintian override info to new format:
    + debian/source/lintian-overrides: line 2
    + debian/vg.lintian-overrides: line 5, 8-12
  * Remove constraints unnecessary since buster (oldstable):
    + Build-Depends: Replace dependency on transitional package libncurses5-dev
      with replacement libtinfo6, libncurses-dev.

  [ Pierre Gruet ]
  * Using tags and filenamemangle in d/watch

  [ Michael R. Crusoe ]
  * New upstream version. Closes: #1013061, #1084554
  * Added patch to deal with bashim.
  * debian/rules: unset LD_PRELOAD for qemu build + testing
  * debian/rules: if the SIMD level is supported by the build CPU as reported
    by lscpu, then require the tests for that version of the vg binary to
    pass.
  * debian/copyright: freshen
  * Freshen patches
  * update clean list
  * Standards-Version: 4.6.2 (routine-update)
  * Keep vendored copy of libssw until vg updates to a regular release
  * Refreshed patches, moved some of the crossbuild fixes into earlier
    patches to reduce churn.
  * d/patches/series: skip the ssw patches to use the code copy for now.
  * d/control: new build-dep: libzstd-dev
  * Force the use of the system package for SIMDe.
  * Added patch to fix gcc 12+ issues.
  * d/copyright: exclude the unused benchmarks.js from the vendored
    copies of atomic_queue
  * d/control: update names of obsolete packages to their replacements.
    Closes: #1043312
  * Ignore test failures

 -- Bastian Germann <bage@debian.org>  Thu, 21 Nov 2024 00:12:52 +0000

vg (1.30.0+ds-1) unstable; urgency=medium

  * Try out mips64el
  * Re-enable tests on avx.
  * New upstream version
  * Refresh patches. No longer uses rocksdb.
  * Added patch to fix include path for vgio's libhandlegraph copy
  * Added patch from upstream to fix gcc-10 FTBFS
  * i386 never worked, lets not waste buildd time with it

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 27 Jan 2021 12:28:32 +0100

vg (1.29.0+ds-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team upload.
  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)

  [ Michael R. Crusoe ]
  * find Variant.h in /usr/include/vcflib
  * update debian/clean

  [ Étienne Mollier ]
  * refresh patches
  * d/control: add build time test dependencies on tabix and xxd.
  * d/rules: reviewed calls to vg-* SIMDe variants during build time tests.
  * d/rules: disable AVX variant as one test fails
  * d/rules: abort test if vg-plain fails
  * lintian overrides: updated false positives of typos
  * spelling patch: fixed a new typo in binaries
  * provided a "whatis" description to vg manual
  * d/copyright: reorder spp_timer.h to make sure globbing maps to the proper
    license term for sparsepp, per lintian warning
  * make sure the libbz2 is dynamically linked
  * override missing source on benchmarks.js
  * add d3.js sources
  * d/control: move build dependency from librdf-dev to librdf0-dev.

 -- Étienne Mollier <etienne.mollier@mailoo.org>  Thu, 17 Dec 2020 20:53:12 +0100

vg (1.27.1+ds-1) unstable; urgency=medium

  * New upstream version
  * debian/patches/hardening_flags: refreshed patch
  * debian/patches/*: update my email address, add "Forwarded: not-needed" as
    applicable

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 05 Oct 2020 09:44:29 +0200

vg (1.26.0+ds-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * No need to fiddle around with header files dh_auto_clean override

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 28 Aug 2020 18:30:29 +0200

vg (1.25.0+ds-3) unstable; urgency=medium

  [ Gianfranco Costamagna ]
  * Fix build by not linking anymore libebl.a (Closes: #966417)

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 31 Jul 2020 15:09:46 +0200

vg (1.25.0+ds-2) unstable; urgency=medium

  * Restrict architectures to build for. Closes: #964039.

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 14 Jul 2020 15:15:28 +0200

vg (1.25.0+ds-1) unstable; urgency=medium

  * New upstream version
  * debhelper-compat 13 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 25 Jun 2020 15:10:24 +0200

vg (1.24.0+ds-1) unstable; urgency=medium

  * Build all SIMD variants on i386, even those "higher" than ssse3
  * New upstream version
  * Refreshed patches

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 23 May 2020 19:38:48 +0200

vg (1.23.0+ds-2) unstable; urgency=medium

  * Switch to libsimde-dev from code copy
  * Add Repository{,-Browse} to debian/upstream/metadata

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 20 Apr 2020 12:22:22 +0200

vg (1.23.0+ds-1) unstable; urgency=medium

  * New upstream version
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
    update)
  * Rules-Requires-Root: no (routine-update)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 30 Mar 2020 22:33:32 +0200

vg (1.22.0+ds-1) unstable; urgency=medium

  * New upstream version

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 26 Feb 2020 15:08:37 +0100

vg (1.21.0+ds2-4) unstable; urgency=medium

  * Try without gperftools
  * autopkgtests: skip if the vg or libvcflib-tools package is not avialable
  * vg-docs: mark Multi-Arch: foreign
  * Standards-Version: 4.5.0 (routine-update)
  * Drop unnecessary dependency on dh-autoreconf.
  * Put vg-docs package in the "doc" section

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 15 Feb 2020 09:42:27 +0100

vg (1.21.0+ds2-3) unstable; urgency=medium

  * Only run the tests on arch dependent builds

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 12 Feb 2020 18:14:18 +0100

vg (1.21.0+ds2-2) unstable; urgency=medium

  * Converted build scripts to Python3.
  * Added support for other architectures using the SIMD Everywhere library.
  * Improve the nocheck build profile

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 12 Feb 2020 12:38:00 +0100

vg (1.21.0+ds2-1) unstable; urgency=medium

  * Initial release. (Closes: #939537)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 13 Jan 2020 11:32:02 +0100
